Documentation

 

Coffee Genome Hub architecture

The data source layer includes the Chado database, relational databases such as CMAP, GreenPhylDB or PGDD, as well as flat files (BAM, VCF, json).
The middleware layer mainly consists of the CMS Drupal and allows the access to various types of data source.
The application layer includes several web applications directly embedded into the portal thanks to iframes.

Gene annotation with Artemis

List of published tools underlying the Coffee Genome Hub