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Protein coding genes in the C. canephora genome were automatically annotated using various sources of evidence (cDNAs, RNA-Seq, protein alignments, and ab initio predictions) that were combined into gene models. We obtained 25,574 protein-coding gene models.

Download:

  • Gene structural and functional annotation (GFF3 file)
  • Gene sequences (FASTA file)
  • CDS sequences (FASTA file)
  • CDS+UTR sequences (FASTA file)
  • Peptide sequences (FASTA file)
  • TE annotation, REPET 3 iterations (GFF3 file)

Complete Assembly:

  • Pseudomolecules (GFF3 file)
  • Pseudomolecules (FASTA file)
  • Pseudomolecules (AGP file)

By Chromosome:

  • Chromosome 1 (FASTA file)
  • Chromosome 2 (FASTA file)
  • Chromosome 3 (FASTA file)
  • Chromosome 4 (FASTA file)
  • Chromosome 5 (FASTA file)
  • Chromosome 6 (FASTA file)
  • Chromosome 7 (FASTA file)
  • Chromosome 8 (FASTA file)
  • Chromosome 9 (FASTA file)
  • Chromosome 10 (FASTA file)
  • Chromosome 11 (FASTA file)
  • Chromosome Un (FASTA file)

Others:

  • Arabica chloroplast genome (FASTA file)
  • Arabica chloroplast genome annotation (GFF file)
  • Arabica chloroplast genes (FASTA file)